[Guest]

Here's a screenie of my current MODS folder.
Notice how categories are identified by the descriptive word after the first underscore, and number codes are independent from categories and only used to easily tell the wrapper what to read first and what later.



I reinstalled all my mods becuase I wanted to have a nice, well organized MODS folder, but that's not really necessary. The new wrapper can read from the Files folder just like tha old wrapper did (I don't know if the filelist is still needed in this case. I used to keep that updated, just in case).
Another quick solution would be to move your whole Files folder into the MODS folder.