[FA_Bong]

I have one concern. I read that the mod folder is removed using HSFX4 because it is not needed.

How does one disable a mod that one does not care to use, but is included in HSFX4?

How does one add a mod that was not included in HSFX4? I used to use the sfs extractor tool to extract some of the stock maps and change the camouflage to desert from summer on Pacific maps and put them in the map mods folder.

Is this going to make it so the only mods you can use are the mods included in this download?

The Jones Soft Generic Mod Enabler (JSGME) is included in it, which will give you the means to enable/disable certain mods and there will be a way to add things, not that you will really need to but I suppose that some will still want to add a few things when they are made available and the means to keep everyone "equal" so that a server can retain the CRT=2 function.
.. And as Guse said wait for 4.1 it will be the answer to all your prayers